Parameter Estimation

Parameter estimation is performed by various MATLAB optimization algorithms. The number of parameters to estimate, possible thermodynamic constraints (can be determined by a standalone script), and upper and lower bounds can be specified in the model section of the settings file. In addition, the parameter indices and the best available parameter sets can specified in the diagnostics section. Optimization algorithm and optimization settings can be found in the optimziation section of the settings file and simulation settings in the simulation section.