Models

We have used multiple models to validate our software tools. Each model has its own repository. In these repositories you can find;

• The model in different formats relevant for the various tools that we provide

• “Matlab” folder with:

  • Settings file relevant to use the model with our MATLAB® tools

  • Some examples of the output provided by our MATLAB® tools after running an Analysis

  This is also the folder were all the run time ouptuts of the matlab analysis are stored.

• “Bionetgen and Steps” folder with relevant files for running the model in the subcellular aplication

• “Neuron” folder with relevant files for running the model in NEURON.

Note: Model_Fujita_2010 does not contain “Bionetgen and Steps” and “Neuron” folders as this model was not implemented in these softwares.

Links to the model repositories:

• https://github.com/jpgsantos/Model_Nair_2016

• https://github.com/jpgsantos/Model_Fujita_2010

• https://github.com/jpgsantos/Model_Viswan_2018